d -Proteobacteria

Kairos Black Mud Clone CE105, AF211258, 600
Desulfosarcina variabilis, M34407, 1527
Kairos Black Mud Clone CE48, AF211262, 600
Kairos Black Mud Clone CE26, 500
Kairos Black Mud Clone CE53, AF211261, 599
Kairos Black Mud Clone CE101, AF211263, 695
Kairos Black Mud Clone MT25, AF211272, 602
Kairos Black Mud Clone MT27, AF211274, 499
Kairos Black Mud Clone CE52, AF211264, 400
Kairos Black Mud Clone MT28, AF211275, 603
Kairos Black Mud Clone MT45, 401
Kairos Black Mud Clone MT23, AF211273, 603
Desulfobacterium catecholicum, AJ237602, 1501
Kairos Black Mud Clone MT24, AF211268, 577
Kairos Black Mud Clone CE24, AF211259, 498
Kairos Black Mud Clone MT67, AF211270, 700
Kairos Black Mud Clone MT26, 600
Kairos Black Mud Clone MT21, AF211269, 514
Kairos Black Mud Clone MT22, AF211271, 612
Kairos Black Mud Clone MT66, 597
Kairos Black Mud Clone CE23, 500
Kairos Black Mud Clone CE21, 500
Kairos Black Mud Clone CE49, AF211260, 700
Kairos Black Mud Clone CE103, AF211267, 700

e -Proteobacteria

Kairos Black Mud Clone CE195, 700
Kairos Black Mud Clone CE262, 698
Helicobacter pylori, U00679, 1765
Kairos Black Mud Clone CE256, 600
Kairos Black Mud Clone CE196, 700
Kairos Black Mud Clone CE98, AF211266, 700
Kairos Black Mud Clone CE46, AF211265, 500

Cyanobacteria

Kairos Black Mud Clone CE56, 500
Kairos Black Mud Clone MT64, 591
Synechococcus PCC 6301, X01296, 1487
Candidate Division KSB2 Kairos Black Mud Clone CE45, AF211305, 701

Low G+C gram positive

Kairos Black Mud Clone CE27, 500
Kairos Black Mud Clone MT38, AF211298, 602
Halobacteroides halobius, U32595, 1505
Bacillus subtilis , D26185, 1551
Kairos Black Mud Clone MT35, AF211297, 699

Spirochetes

Kairos Black Mud Clone MT53, AF211322, 500
Kairos Black Mud Clone MT51, AF211323, 500
Kairos Black Mud Clone MT47, AF211324, 505
Kairos Black Mud Clone MT52, AF211326, 600
Kairos Black Mud Clone MT57, AF211325, 718
Kairos Black Mud Clone MT49, AF211328, 500
Kairos Black Mud Clone MT7, AF211320, 516
Kairos Black Mud Clone MT6, AF211319, 1120
Kairos Black Mud Clone MT9, AF211329, 1125
Kairos Black Mud Clone CE62a, 698
Kairos Black Mud Clone MT10, AF211318, 623
Kairos Black Mud Clone MT4, AF211321, 1133
Spirochaeta halophila, M88722, 1553
Borrelia burgdorferi, M64310, 1467
Kairos Black Mud Clone MT2, AF211302, 935
Kairos Black Mud Clone MT54, AF211327, 700

Fusobacteria

Fusobacterium nucleatum, M58683, 1494
Kairos Black Mud Clone CE199, 409

Cytophagales

Kairos Black Mud Clone MT69, AF211289, 599
Cytophaga fermentans, M58766, 1463
Kairos Black Mud Clone CE54, AF211291, 700
Kairos Black Mud Clone CE259, 500
Kairos Black Mud Clone CE22, AF211290, 500
Kairos Black Mud Clone CE198, 497
Kairos Black Mud Clone CE55, AF211292, 700
Flavobacterium johnsoniae, M59051, 1442
Kairos Black Mud Clone CE61, AF211300, 700
Flexibacter litoralis, M58784, 1470
Kairos Black Mud Clone MT60, AF211288, 700
Kairos Black Mud Clone CE60, AF211293, 700
Kairos Black Mud Clone MT31, 360
Kairos Black Mud Clone MT41, 293

TM7 Division

Peat Bog Clone TM7, 972

Candidate Division KSA1

Kairos Black Mud Clone MT70, AF211301, 929

a - Proteobacteria

Roseobacter litoralis, X78312, 1369
Kairos Black Mud Clone CE104, AF211283, 549
Kairos Black Mud Clone MT68, AF211284, 584
Kairos Black Mud Clone CE58, AF211286, 500
Kairos Black Mud Clone MT30, AF211285, 400

TM6 Division

Peat Bog Clone TM6, 1331

Candidate Division KSB1

Kairos Black Mud Clone MT63, AF211303, 933
Kairos Black Mud Clone CE99, AF211304, 697

Actinobacteria

Fibrobacter intestinalis, M62691, 1344
Mycobacterium tuberculosis , S45301, 1536

g - Proteobacteria

Kairos Black Mud Clone CE100, AF211279, 597
Kairos Black Mud Clone MT58, AF211277, 700
Chromatium vinosum, M26629, 1483
Kairos Black Mud Clone MT33, AF211276, 347
Kairos Black Mud Clone MT44, AF211281, 402
Kairos Black Mud Clone CE102, AF211280, 699
Kairos Black Mud Clone CE106, 677
Kairos Black Mud Clone CE194, 650
Kairos Black Mud Clone CE57, AF211282, 600
Kairos Black Mud Clone CE47, AF211278, 600
Escherichia coli, J01695, 1542
Kairos Isolate CE72, 750

Flexistipes

Hydrothermal vent clone PVB_OTU_9A, U15118, 1007
Kairos  Black Mud Clone CE197, 570
Flexistipes sinusarabici, M59231, 1473
Candidate Division KSB4 Kairos Black Mud Clone CE50, AF211307, 600

Verrucomicrobia

Kairos Black Mud Clone MT29, AF211331, 550
Kairos Black Mud Clone MT56, AF211330, 727
Verrucomicrobium spinosum, X90515, 1489
Kairos Black Mud Clone CE59, AF211306, 700
Contaminated Aquifer Clone WCHA1-39, AF050552, 965

Chlamymida

Chlamydophila psittaci, M13769, 1552

Synergistes

Synergistes jonesii, L08066, 1335
Candidate Division KSB3 Kairos Black Mud Clone MT59, 932

Nitrospira

Nitrospira marina, X82559, 1533

Archaea

Kairos Black Mud Clone MT16, AF211312, 600
Haloarcula marismortui, X61688, 1472
Kairos Black Mud Clone MT19, AF211315, 600
Kairos Black Mud Clone MT17, AF211314, 600
Kairos Black Mud Clone MT12, AF211317, 557
Kairos Black Mud Clone MT20, AF211316, 500
Halobacterium halobium, M11583, 1473
Kairos Black Mud Clone MT15, AF211311, 610
Kairos Black Mud Clone MT13, AF211308, 600
Kairos Black Mud Clone MT18, AF211310, 594
Kairos Black Mud Clone MT14, AF211313, 600
Kairos Black Mud Clone MT11, AF211309, 500
Methanococcus vannielii, M36507, 1466
Hot spring clone pJP27 Barns, L25852, 1339
Sulfolobus acidocaldarius, D14876, 1492

Eucarya

Tetrahymena thermophila, M10932, 1753